FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541484
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC52680.9728819318761035No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48720.8997495770881504No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG39370.7270759616165944No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA33080.6109137112084568No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT27050.4995530800540736No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22840.421803783675972No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG21860.40370537264258965No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC20470.37803517740136366No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG20210.37323355814760917No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG20150.3721254921659735No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18290.33777544673526827No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG14450.2668592239105865No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC13720.25337775446735267No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC13180.24340516063263182No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT11980.22124384099991876No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11980.22124384099991876No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG11420.210901891837986No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG9580.1769212017344926No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9140.16879538453583115No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8940.1651018312637123No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT8810.16270102163683506No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC8710.16085424500077564No Hit
CTGCGTTACGACTGGGGTAAATTCTATGCAA8510.1571606917286568No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7640.14109373499493982No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC7570.13980099134969826No Hit
CTGGACAGCCTGCGCATGGAGATGGAACGTC7560.13961631368609229No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7500.13850824770445663No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7460.13776953705003286No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6920.12779694321531201No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6680.12336467928876937No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6500.12004048134386242No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6350.11727031638977328No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5840.10785175554587025No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5840.10785175554587025No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5780.10674368956423458No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5660.10452755760096329No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5540.10231142563769198No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5500.1015727149832682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)