FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences580204
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23610.40692583987700875No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21060.3629757809322238No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18950.3266092615700684No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18710.3224727854340887No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16480.28403802800394345No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14240.2454309174014657No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12360.21302852100295758No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10700.18441789439576425No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9460.1630461010265355No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9410.16218433516487304No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9250.1594266844075532No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8490.14632784331028398No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8470.145983136965619No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7640.13167782366202233No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7550.13012664511102992No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7530.12978193876636493No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7280.12547310945805268No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7210.12426663725172526No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7190.12392193090706029No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG6770.11668309766909571No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6730.11599368497976574No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG6720.11582133180743324No Hit
ACGGCGCGGACGTTTACGACCGGCAGAGAAGATATCAGTGGTGG6560.11306368105011341No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6430.11082308980979105No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6060.10444602243348891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)