FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences580204
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50690.8736582305533915No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA42200.7273303872431076No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19750.3403975153566676No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18910.3259198488807385No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17030.2935174524822304No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16860.29058744855257806No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11770.20285968383534067No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10190.17562788260680726No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10190.17562788260680726No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9480.16339080737120046No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9240.1592543312352207No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8650.14908549406760382No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8220.14167430765730674No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8190.14115724814030928No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7870.1356419466256696No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7820.13478018076400713No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7770.1339184149023447No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7640.13167782366202233No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG7560.1302989982833624No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7280.12547310945805268No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG7240.12478369676872272No Hit
CGCTCCCTGCAGATCGTCGACCCAAAATACA7240.12478369676872272No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6830.11771721670309064No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6570.11323603422244591No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6420.11065073663745854No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6300.10858249856946867No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG6120.10548014146748384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)