FastQCFastQC Report
Sun 21 May 2023
EGAF00007924769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences582949
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24090.4132436971330254No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20170.34599939274276137No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19360.3321045237233446No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18820.32284127771040005No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16010.27463809012452206No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14960.2566262228771299No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12020.2061929945844319No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11170.1916119591936859No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9920.17016926008964764No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9380.1609060140767031No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9350.1603913892982062No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8480.14546727072179555No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8130.13946331497266484No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8120.13929177337983256No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7910.13568939993035412No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7660.13140086010954646No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7640.13105777692388185No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7240.12419611321058961No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7190.12333840524642807No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7000.12007911498261427No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG6840.11733444949729736No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6730.115447491976142No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG6450.11064432737683742No Hit
ACGGCGCGGACGTTTACGACCGGCAGAGAAGATATCAGTGGTGG6340.10875736985568206No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5890.1010379981782283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)