FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences582949
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51170.8777783305229103No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA42030.7209893146741825No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20170.34599939274276137No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20000.34308318566461216No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16520.28338671135896965No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16390.28115667065214967No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12140.20825149369841955No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11360.1948712494574997No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10090.17308546716779685No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9700.1663953450473369No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9680.1660522618616723No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8950.15352972558491396No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8810.15112814328526167No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8340.1430656884221433No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8340.1430656884221433No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8240.14135027249382023No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8170.14014948134399408No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG7490.12848465303139725No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7400.1269407786959065No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7300.12522536276758342No Hit
CGCTCCCTGCAGATCGTCGACCCAAAATACA7160.12282378046793116No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6940.11904986542562042No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG6650.11407515923348355No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6630.11373207604781893No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG6180.10601270437036517No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6140.10532653799903594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)