FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563920
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21830.38711164704213363No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20420.3621081004397787No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18450.32717406724358067No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17570.3115690168818272No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15690.278230954745354No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13780.2443609022556391No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11880.21066817988367142No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10100.17910341892467016No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9710.17218754433252942No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9270.1643850191516527No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9000.15959710597247836No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8630.15303589161583203No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7390.13104695701517946No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7320.1298056461909491No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7290.12927365583770747No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6990.12395375230529154No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6950.12324443183430274No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6880.12200312101007237No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG6810.12076181018584196No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6810.12076181018584196No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6720.11916583912611718No Hit
ACGGCGCGGACGTTTACGACCGGCAGAGAAGATATCAGTGGTGG6640.1177471981841396No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG6110.1083487019435381No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5940.10533408994183571No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5780.10249680805788056No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5670.10054617676266138No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)