FastQCFastQC Report
Wed 31 May 2023
EGAF00007924772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563920
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51820.918924670165981No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49930.8854092779117605No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA39340.6976166832174777No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19080.3383458646616541No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17900.31742091076748474No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16200.2872747907504611No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15530.2753936728613988No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11080.1964817704638956No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10100.17910341892467016No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8850.15693715420627039No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8840.1567598240885232No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8400.14895729890764647No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8290.1470066676124273No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8040.14257341466874734No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7460.13228826783940986No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7320.1298056461909491No Hit
CGCTCCCTGCAGATCGTCGACCCAAAATACA7280.12909632571996027No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7250.12856433536671869No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7190.1275003546602355No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG7130.12643637395375232No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7030.12466307277628032No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG6700.11881117889062279No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6360.11278195488721805No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG6010.10657540076606611No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5950.10551142005958292No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5840.10356078876436374No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5830.10338345864661654No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)