FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534233
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50290.9413495609593567No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11820.22125177591051098No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11050.2068385891549193No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7660.14338313058160015No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7260.13589576083843566No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7240.13552139235127744No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6920.12953149655674584No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6470.12110820559568578No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6390.11961073164705287No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6240.1168029679933662No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5840.10931559825020169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)