FastQCFastQC Report
Wed 31 May 2023
EGAF00007924775

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924775
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences553445
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13060.23597647462710838No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9170.165689454236645No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8440.15249934501169946No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7250.13099766011076078No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6810.12304745729024565No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6750.12196333872381175No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5950.10750842450469333No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5540.10010028096739514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)