FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences553445
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13330.24085500817606084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11920.21537822186486463No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11180.20200742621218007No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8560.15466758214456722No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7760.1402126679254488No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7260.13117834653849977No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7220.13045560082754384No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7170.12955216868884895No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6070.1096766616375611No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5670.10244920452800188No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5570.10064234025061207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)