FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537743
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12210.22706013839324732No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8930.16606445830071243No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8580.1595557729249846No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7390.13742624264751005No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6470.12031769823131123No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6240.11604056212726153No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5950.11064765138737277No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5710.10618455284401657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)