FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537743
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50140.9324156706828355No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12160.22613032619671478No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11260.209393706659129No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8550.1589978856070651No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7310.13593854313305798No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7260.13500873093652543No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7060.13128948215039526No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6520.12124751042784379No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6140.11418093773419645No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5940.11046168894806627No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)