FastQCFastQC Report
Sun 21 May 2023
EGAF00007924779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543907
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20890.3840730124819133No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18790.3454634707771733No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16950.3116341580454012No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14010.25758079965876524No Hit
CGGTTCGCGCGGCTCACGTGGTACGCGCGGTTCACGCGGAACAC10120.18606122002474687No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10010.1840388154592605No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC9880.1816487009727766No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9570.17594919719731497No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9220.16951427357985832No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC8900.16363091484389794No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8580.15774755610793756No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8320.15296732713496974No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7660.1408328997420515No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG7360.13531725092708866No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG7160.1316401517171134No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6280.11546091519322238No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG6070.11159996102274837No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5720.10516503740529172No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5590.10277492291880781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)