FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543907
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51330.943727512240144No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA43480.7994013682486161No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20320.37359327973348383No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18340.33718999755472906No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16700.3070377840329321No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11080.20371129623262801No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG10620.19525396804968498No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10600.19488625812868743No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10530.19359927340519612No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9320.17135282318484596No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9180.16877885373786328No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC8710.1601376705944215No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8690.15976996067342394No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA8050.1480032432015032No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7860.1445099989520267No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7660.1408328997420515No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6480.11913801440319761No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6360.11693175487721245No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5840.10737129693127687No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5660.10406190764229914No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5570.10240721299781029No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5480.10075251835332143No Hit

[OK]Adapter Content

Adapter graph