FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924784

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924784
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524384
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34680.661347409531946No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12490.23818423140294134No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12470.23780283151278453No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9590.18288124733020075No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9540.18192774760480868No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7720.14722035760053703No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7640.1456947580399097No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7500.14302495880881186No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7440.14188075913834136No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7180.13692256056630256No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7160.13654116067614572No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA6630.1264340635869897No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6380.12166656496002928No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5780.11022456825532435No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5730.10927106852993226No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5720.10908036858485386No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5570.10621986940867761No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5510.1050756697382071No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5470.10431286995789345No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5300.10107097089156038No Hit

[OK]Adapter Content

Adapter graph