FastQCFastQC Report
Sun 21 May 2023
EGAF00007924785

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924785
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505445
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15210.30092294908447015No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13710.27124612964813183No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10970.21703647281108726No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9140.18083075309875457No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8800.1741040073598512No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6850.13552414209261146No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6840.13532629662970252No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6790.13433706931515793No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6590.1303801600569795No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG6450.12761032357625457No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6220.1230598779293494No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5620.11118915015481408No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5620.11118915015481408No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5590.11059561376608731No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5440.10762793182245349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)