FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509334
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46820.9192396345030962No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32870.6453525584390597No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11500.2257850447839728No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11410.22401803139001125No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9130.17925369207631928No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7950.15608618313326814No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7340.14410975901864004No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7110.13959405812296058No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7110.13959405812296058No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7110.13959405812296058No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6520.128010303651435No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA6300.12369093757730683No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5990.11760455810921712No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5830.11446320096439665No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5530.10857315631785823No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5510.10818048667475566No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5500.1079841518532044No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5430.10660980810234541No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5130.100719763455807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)