FastQCFastQC Report
Wed 31 May 2023
EGAF00007924790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514588
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31980.6214680482249877No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22540.4380203191679557No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19950.38768879181014715No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG19900.38671714070285357No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16900.32841807426523745No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16310.31695259119917296No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13910.27031333804908003No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13890.2699246776061626No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12810.24893701368862078No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12210.23727720040109757No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC12010.2333905959719232No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12000.23319626575046443No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11920.23164162397879468No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11230.21823283869814297No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG10450.20307508142436279No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10240.19899414677372967No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9970.19374723079434422No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9800.19044361702954596No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9620.186945673043289No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9270.1801441152922338No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8830.1715935855480501No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8400.16323738602532512No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8130.15799047004593966No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8110.15760180960302222No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7880.15313221450947165No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7850.1525492238450955No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7580.14730230786571005No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7050.13700280612839788No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7040.13680847590693915No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6920.13447651324943452No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6790.13195022037047113No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6370.12378835106920487No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6280.12203937907607638No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6240.12126205819024151No Hit
GCGCGCGGCTCCACCTACGGTACCCCGCGTC6030.1171811235396084No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5810.11290585866751653No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5450.1059099706950026No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5420.10532698003062645No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5370.10435532892333285No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5340.10377233825895668No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5240.10182903604436946No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5220.10144037560145204No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5150.10008006405124098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)