FastQCFastQC Report
Wed 31 May 2023
EGAF00007924792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496586
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47530.957135319964719No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30710.618422589440701No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21310.42913010032501925No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19860.39993072700398324No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG18450.3715368536366309No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15170.3054858574345632No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14740.29682673293246287No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13690.27568235914826433No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13000.2617874849472196No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12470.2511146105609099No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC11750.23661561139460235No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11600.23359498656828825No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10940.22030423733250637No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10910.21970011236724352No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG10240.20620798814304067No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10110.20359011329356846No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9350.18828561417357717No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9310.18748011421989344No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9090.1830498644746328No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8990.1810361145904234No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8560.17237699008832305No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7900.15908624085254117No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7800.15707249096833178No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7600.153044991199913No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7500.15103124131570364No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7390.14881611644307333No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7330.14760786651254768No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7160.14418449170939174No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6860.13814324205676357No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6760.13612949217255418No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6740.13572674219571232No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6610.13310886734624014No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6460.13008824251992604No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6100.12283874293677229No Hit
GCGCGCGGCTCCACCTACGGTACCCCGCGTC5750.11579061834203945No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5330.10733286882836005No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5270.10612461889783441No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5260.10592324390941348No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5090.10249986910625752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)