FastQCFastQC Report
Wed 31 May 2023
EGAF00007924793

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924793
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518368
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23840.45990493240323477No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21600.41669238841903816No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG18970.36595623186616455No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18820.3630625347243657No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15070.2907201061793938No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14150.2729720970430274No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13170.2540666090499413No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG12150.234389468485709No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11940.23033829248719057No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11540.22262176677572693No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11410.2201138959195012No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10920.2106611519229582No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA10850.20931075992345208No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9390.18114544107660965No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8860.1709210445089203No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8420.16243286622631026No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8060.15548799308599295No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7940.15317303537255386No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7790.15027933823075498No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7760.14970059880239522No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7620.14699981480338292No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7480.14429903080437062No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7330.14140533366257177No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7300.14082659423421198No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7120.13735415766405334No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6880.13272424223717513No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6820.1315667633804556No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6220.11999197481326009No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6180.11922032224211371No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5990.11555497252916846No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5950.1147833199580221No Hit
TTCGTGCAGAGGATATGCCATGCCCTGGGCCGCCAGATGGATGG5830.112468362244583No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5830.112468362244583No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5280.10185813939132045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)