FastQCFastQC Report
Sun 21 May 2023
EGAF00007924794

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924794
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518368
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32830.6333338477683808No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21900.422479782702636No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20440.39431446385579355No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG19650.3790743255756528No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16840.3248657324526205No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15580.30055867646150997No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14540.28049570961170445No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14140.27277918390024075No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13210.2548382616210877No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG12080.23303907648620287No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12030.23207451077226987No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11620.22416507191801963No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11500.2218501142045805No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC11490.22165720106179393No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10490.20236588678313477No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10070.1942635347860979No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9970.192334403358232No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9820.1894407062164331No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9620.1855824433607013No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9470.18268874621890238No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9150.17651552564973147No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8800.16976356565220077No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8320.16050373479844435No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8250.1591533427989382No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8110.15645255879992592No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7720.14892894623124883No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7660.1477714673745293No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7410.1429486388048645No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7320.1412124205197852No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7190.13870454966355947No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7190.13870454966355947No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6850.13214550280881535No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6780.13079511080930922No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6700.12925180566701647No Hit
GCGCGCGGCTCCACCTACGGTACCCCGCGTC6370.12288567195505896No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5970.11516914624359528No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5670.10938175195999753No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5610.10822427310327798No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5410.10436601024754613No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5400.10417309710475954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)