FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528570
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23820.45064986662126116No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18880.3571901545679853No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15820.29929810621109787No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15090.2854872580736705No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14910.28208184346444176No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10100.19108159751783113No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9650.18256806099475945No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9180.17367614507066237No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8520.16118962483682386No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8100.1532436574152903No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7910.14964905310554893No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7670.145108500293244No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7500.14189227538452806No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6980.13205441095786746No Hit
CAGACGGCCACGCAGGGAGTCACCTTCCTGCAGAGACACTTCGG6940.13129765215581665No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6740.12751385814556254No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6520.12335168473428307No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT6190.11710842461736383No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5970.11294625120608436No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5690.10764893959172862No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT5620.1063246116881397No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5570.10537866318557619No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5550.10500028378455079No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5490.10386514558147454No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)