FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924798

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924798
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528570
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48540.9183268062886656No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32630.6173259927729534No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22630.4281362922602494No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19260.3643793631874681No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17010.3218116805721097No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16700.3159467998562158No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16100.3045954178254536No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14620.2765953421495734No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9860.18654104470552624No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9130.17273019656809885No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8690.16440584974553987No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7930.15002743250657435No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7880.14908148400401083No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7880.14908148400401083No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7390.13981118867888834No Hit
GTAGCGAGCGGTAACAACGGTCGCGGCTACA7170.13564901526760884No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7090.13413549766350719No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6730.12732466844504986No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6620.1252435817394101No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG6410.12127059802864333No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6350.12013545982556709No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6310.11937870102351628No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6070.11483814821121138No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5790.10954083659685566No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5740.10859488809429214No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5560.10518947348506348No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5510.10424352498249995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)