FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550248
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33860.6153588927174656No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23050.41890202236082635No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20990.3814643578895334No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18370.33384946424157835No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18330.33312251930038816No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18240.3314868931827103No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15840.2878701967113011No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10850.19718381529782933No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10840.1970020790625318No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9580.17410331341504193No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9110.16556171035605763No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9000.16356261176778472No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8340.15156802023814717No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8300.150841075296957No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8070.14666114188511362No Hit
GTAGCGAGCGGTAACAACGGTCGCGGCTACA7620.13848301129672438No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7160.1301231444730376No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6910.12557973859059915No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6900.1253980023553016No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6840.12430758494351639No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG6670.12121806894345823No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6530.11867376164929268No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6150.1117677847079862No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6060.11013215859030838No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5990.10886000494322559No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5990.10886000494322559No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5880.10686090635495268No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5660.10286270917840683No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5650.10268097294310928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)