FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533253
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23500.4406913791389828No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20250.3797446990452937No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15570.29198147971038135No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15270.28635563231711775No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14980.2809173131702963No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10470.1963420740249No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10020.1879033029350046No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9360.17552643866982465No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8650.1622119331724341No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8570.16071170720089714No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8210.1539606903289808No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8040.15077271013946475No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7540.14139629781735874No Hit
CAGACGGCCACGCAGGGAGTCACCTTCCTGCAGAGACACTTCGG7120.1335201114667897No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6990.1310822442630421No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6670.12508134037689428No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6630.12433122739112579No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6360.11926796473718854No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6250.11720515402632523No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT6130.11495481506901978No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5690.10670357222556648No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5560.10426570502181892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)