FastQCFastQC Report
Sun 21 May 2023
EGAF00007924802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533253
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48720.9136376166660104No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31290.5867758831173946No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23930.448755093735994No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20260.3799322272917358No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17590.32986218549168966No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17080.3202982449231416No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16630.31185947383324614No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15040.282042482648949No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10310.19334162208182606No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9050.1697130630301189No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8570.16071170720089714No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8150.15283552085032806No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7970.14946001241436993No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7750.14533439099264328No Hit
GTAGCGAGCGGTAACAACGGTCGCGGCTACA7360.13802078938140058No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7210.13520786568476875No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7160.13427022445255818No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6910.12958201829150517No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6760.12676909459487334No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6630.12433122739112579No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6380.11964302123007278No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6210.11645504104055672No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG6070.11382964559036705No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5800.10876638293642979No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5800.10876638293642979No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5790.10857885468998768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)