FastQCFastQC Report
Sun 21 May 2023
EGAF00007924803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505086
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15910.31499586209081226No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14060.2783684362662992No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10930.2163987914929339No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9610.19026462820192996No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9500.18808678126101297No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7750.153439216291879No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7650.15145935543649994No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7460.14769761981127966No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7390.1463117172125143No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7020.1389862320476117No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6480.12829498342856466No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6160.12195942869135158No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6140.12156345652027575No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6110.12096949826366205No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5970.11819769306613132No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5970.11819769306613132No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5870.11621783221075223No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5510.10909033313138752No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5400.10691248619047053No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)