FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524200
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17260.32926363983212514No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15780.3010301411674933No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11620.22167111789393362No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10630.20278519648988935No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9960.19000381533765737No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8070.15394887447539107No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7810.1489889355207936No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7780.14841663487218618No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7680.14650896604349484No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7170.13677985501716902No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7090.13525371995421595No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6550.1249523082792827No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6500.12399847386493704No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6310.1203739030904235No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6230.11884776802747042No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6180.11789393361312475No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6100.11636779855017168No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5920.11293399465852728No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5890.11236169400991988No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5470.10434948492941626No Hit

[OK]Adapter Content

Adapter graph