FastQCFastQC Report
Wed 31 May 2023
EGAF00007924806

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924806
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524200
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20700.3948874475391072No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17720.3380389164441053No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11720.22357878672262496No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11580.2209080503624571No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11210.21384967569629912No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10860.20717283479587942No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9760.1861884776802747No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8820.16825639069057613No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8420.16062571537581077No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8240.15719191148416634No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8100.1545211751239985No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7760.1480351011064479No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7640.1457458985120183No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7580.1446012972148035No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7300.13925982449446778No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7020.13391835177413203No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6830.13029378099961847No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6690.1276230446394506No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6670.12724151087371233No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6260.11942006867607784No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6200.11827546737886302No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6140.11713086608164823No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5940.11331552842426555No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5690.1085463563525372No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5440.10377718428080886No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5300.10110644792064097No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)