FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510871
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47230.924499531192806No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20600.4032329100692738No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13080.2560333234808787No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11670.22843340099555468No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11530.22569298316013242No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11400.2231483094558117No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10900.21336110290073226No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10510.2057270817877703No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9450.18497820389100184No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9070.17753992690914144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8270.1618803964210143No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7840.15346339878364595No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7470.14622086593288716No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7250.1419144950486522No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7180.14054428613094108No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6680.13075707957586163No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6420.1256677321672203No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5470.10707203971256933No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5440.10648480731926455No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5320.10413587774604548No Hit

[OK]Adapter Content

Adapter graph