FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924813

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924813
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550815
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11670.21186786852209907No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9620.17465029093252724No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8820.16012635821464558No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6650.1207301907173915No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)