FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503989
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9580.19008351372748214No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9470.18790092640910813No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8770.1740117343830917No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8000.1587336231544736No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7330.14543968221528644No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6040.11984388548162757No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6030.11964546845268449No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5890.11686763004748119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)