FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503989
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9770.1938534372774009No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9440.18730567532227885No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8840.17540065358569334No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8790.17440856844097788No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8670.17202756409366077No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8250.1636940488780509No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7750.1537731974308963No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7280.14444759707057098No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6080.12063755359739996No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5940.11785971519219665No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5730.11369295758439173No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5440.10793886374504205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)