FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507486
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9850.19409402426864977No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9330.18384743618543173No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8920.17576839558135596No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8630.17005395222725356No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7830.15428997056076424No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6590.1298557989777058No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6320.12453545516526565No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5850.11527411593620317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)