FastQCFastQC Report
Sun 21 May 2023
EGAF00007924818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507486
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10690.21064620501846354No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9850.19409402426864977No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9680.1907441781645208No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9040.17813299283132933No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8990.17714774397717375No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8410.16571885726896898No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7770.15310767193577754No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7510.1479843778941685No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6270.12355020631111006No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6200.12217085791529224No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5950.11724461364451433No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5710.11251541914456754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)