FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488541
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9730.19916445088539142No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9130.18688298423264374No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9060.18545014645648983No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8290.169688930918797No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7450.15249487760495026No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6260.12813663541033404No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5760.11790207986637764No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5420.11094258209648729No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4940.10111740877428917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)