FastQCFastQC Report
Sun 21 May 2023
EGAF00007924820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488541
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44740.9157880300732181No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9770.1999832153289079No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8920.18258447090418203No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8770.17951410424099512No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8630.17664842868868735No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7990.16354819759242314No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7400.1514714220505546No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7060.14451192428066426No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5800.11872084430989416No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5690.11646924209022375No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5330.10910036209857514No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5060.10357370210483868No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5010.10255024655044305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)