FastQCFastQC Report
Wed 31 May 2023
EGAF00007924828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440839
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39290.8912550840556304No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14080.31939097947323175No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13150.2982948423347299No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6710.152209763655212No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6610.14994136181236234No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5700.12929890504243044No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)