FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459987
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT55131.1985121318645962No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40840.8878511784028679No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC38640.8400237398013423No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG29090.6324091767810829No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA23730.5158841445519113No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG21370.4645783467793655No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT21290.4628391671938555No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21210.4610999876083454No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16590.3606623665451415No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15220.3308789161432823No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC14180.308269581531652No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG14130.3071825942907082No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10560.22957170528732332No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT10480.2278325257018133No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9990.21718005074056443No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9560.20783196046844804No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9440.205223191090183No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8700.18913577992421524No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8660.18826619013146023No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7960.17304836875824753No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7400.16087411165967733No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7300.15870013717778983No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6930.15065643159480593No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6600.1434823158045771No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6340.1378299821516695No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6240.13565600766978198No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5720.1243513403639668No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5670.12326435312302304No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5620.12217736588207928No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5480.11913380160743672No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC5270.11456845519547292No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4760.10348118533784649No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4740.103046390441469No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4660.10130721085595898No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG4600.10000282616682646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)