FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924845

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924845
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472290
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10940.23163734146393108No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10780.2282495924114421No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10610.22465010904317265No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9980.21131084714899745No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8340.17658641936098585No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7890.16705837515086072No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7720.1634588917825912No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7410.1568951279933939No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6830.1446145376781215No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6550.13868597683626585No Hit
TTCCATAGCTTTTGCGGTAGTGCTGGCCAGAACCATGCGGTTTT6300.1333926189417519No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6030.1276757924156768No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5820.12322937178428509No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5710.12090029431069893No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5700.12068855999491838No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5540.11730081094242945No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG5090.1077727667323043No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT5080.10756103241652375No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG5050.10692582946918207No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4920.10417328336403481No Hit

[OK]Adapter Content

Adapter graph