FastQCFastQC Report
Sun 21 May 2023
EGAF00007924846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472290
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41780.8846259713311736No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22820.4831777086112346No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16500.3493616210379216No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14230.30129793135573485No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11600.24561180630544793No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9870.2089817696754113No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9470.20051239704418894No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9130.19331343030764997No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7760.16430582904571345No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7120.1507548328357577No Hit
GCAGTCACCACCGAAGTTGCATTCGGTCTGG6490.13741557094158252No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6270.1327574159944102No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6050.12809926104723793No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6040.12788752673145737No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5990.12682885515255457No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5830.12344110610006563No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5540.11730081094242945No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5460.11560693641618498No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5290.11200745304791547No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5140.10883143831120709No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC5090.1077727667323043No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5000.10586715789027928No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4830.10226767452200979No Hit

[OK]Adapter Content

Adapter graph