FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513889
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10230.19907022722805895No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT8780.17085401711264495No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7320.1424432124447108No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6810.13251889026618588No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6760.1315459175035854No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6570.12784862100570357No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6380.12415132450782174No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5460.10624862567597283No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5340.10391349104573167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)