FastQCFastQC Report
Wed 31 May 2023
EGAF00007924848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513889
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46310.901167372720568No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13880.27009723889789433No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11230.21852968248006868No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10020.19498374162513693No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9860.19187022878481538No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9030.17571888092564736No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7340.14283240154975102No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6600.12843240466326386No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6270.12201078443010067No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5440.10585943657093262No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5260.10235673462557089No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5210.10138376186297042No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5190.10099457275793021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)