FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535888
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10230.19089809811005284No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT9880.18436688263219178No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7840.14629922670408743No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7270.13566267578299943No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6650.12409309407935987No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6530.12185382020123607No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6330.11812169707102976No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5940.11084405696712746No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5360.10002089988952916No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)