FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535888
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA14350.26777983459230287No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11870.22150150777774463No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10730.20022840593556862No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10590.19761591974442422No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10260.1914579165795838No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG10140.18921864270146No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7890.147232257486639No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6490.12110739557519482No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6380.11905472785358134No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5940.11084405696712746No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5730.10692532768041083No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5590.10431284148926642No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)