FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences538263
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA17570.3264203558483492No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13500.25080676175029676No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11200.20807672085950546No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10690.1986017987489387No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7620.1415664832990564No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7210.13394938905330667No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7000.13004795053719093No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6670.12391711858329478No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6530.12131615957255096No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5980.1110981063160574No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5940.1103549751701306No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5850.10868293009179528No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5430.10088005305956382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)