FastQCFastQC Report
Wed 31 May 2023
EGAF00007924856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520122
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46730.8984430575903346No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16970.32626960597705923No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13720.263784265999131No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10480.2014911886057502No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7210.138621323458727No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7180.13804453570508457No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6220.1195873275885273No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6200.11920280241943236No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6130.11785696432760005No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5610.10785930993113153No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5370.10324500790199222No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5270.1013223820565175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)