FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526111
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11980.22770860141681126No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11490.21839497748573972No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10660.20261883899025113No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9760.18551218279032372No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8630.164033825561526No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8360.1589018287015478No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7840.14901798289714527No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7530.14312569020605917No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6380.1212671850617075No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6060.11518481841284443No Hit
TTTCGGCACCAGCAGGGAAGCGCGGGTCTTGTTACCGGTGATGG5780.10986274759508924No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5690.10815208197509651No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5510.10473075073511103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)