FastQCFastQC Report
Wed 31 May 2023
EGAF00007924858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526111
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26380.5014151006156495No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14610.27769805231215466No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12900.2451954055322926No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10710.20356920877913598No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10430.19824713796138077No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8930.1697360442948351No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8810.16745515680151146No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8460.16080256827931746No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8450.1606124943215405No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6640.12620910796390875No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5980.11366422675062866No Hit
ATTGAAAACGTAGCATTCTTCGGCAAACTGC5870.11157341321508199No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5610.10663149031288074No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)