FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528044
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12100.229147571035747No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11210.21229291498435737No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10890.2062328139321723No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9550.18085614077614745No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8310.1573732491989304No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7720.14619993788396424No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7660.14506366893667952No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7600.14392739998939483No Hit
TTTCGGCACCAGCAGGGAAGCGCGGGTCTTGTTACCGGTGATGG6210.11760383604396603No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6060.11476316367575429No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6040.11438440735999274No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5990.11343751657058881No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5910.11192249130754255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)